STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0939Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231. (521 aa)    
Predicted Functional Partners:
MXAN_0940
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.
 
    
0.819
MXAN_0941
Hypothetical protein; Identified by Glimmer2; putative.
       0.632
MXAN_0942
Hypothetical protein; Identified by Glimmer2; putative.
       0.552
MXAN_2254
Conserved domain protein; Identified by similarity to GB:AAO79513.1.
  
     0.487
MXAN_2297
Conserved hypothetical protein; Identified by similarity to PIR:AH2368.
  
    0.453
MXAN_5330
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02464.
  
    0.437
MXAN_0937
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.409
MXAN_0938
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.409
MXAN_0943
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.402
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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