MXAN_0939 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0939

Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231. (521 aa)

Predicted Functional Partners:

MXAN_0940

0.819

MXAN_0941

0.632

MXAN_0942

0.552

MXAN_2254

0.487

MXAN_2297

0.453

MXAN_5330

0.437

MXAN_0937

0.409

MXAN_0938

0.409

MXAN_0943

0.402

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0937	MXAN_0938	Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.876
MXAN_0937	MXAN_0939	Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	0.409
MXAN_0938	MXAN_0937	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.876
MXAN_0938	MXAN_0939	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	0.409
MXAN_0939	MXAN_0937	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.409
MXAN_0939	MXAN_0938	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.409
MXAN_0939	MXAN_0940	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	0.819
MXAN_0939	MXAN_0941	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Hypothetical protein; Identified by Glimmer2; putative.	0.632
MXAN_0939	MXAN_0942	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Hypothetical protein; Identified by Glimmer2; putative.	0.552
MXAN_0939	MXAN_0943	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.402
MXAN_0939	MXAN_2254	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved domain protein; Identified by similarity to GB:AAO79513.1.	0.487
MXAN_0939	MXAN_2297	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by similarity to PIR:AH2368.	0.453
MXAN_0939	MXAN_5330	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02464.	0.437
MXAN_0940	MXAN_0939	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	0.819
MXAN_0940	MXAN_0941	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Hypothetical protein; Identified by Glimmer2; putative.	0.658
MXAN_0940	MXAN_0942	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Hypothetical protein; Identified by Glimmer2; putative.	0.574
MXAN_0940	MXAN_0943	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.416
MXAN_0940	MXAN_2254	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved domain protein; Identified by similarity to GB:AAO79513.1.	0.671
MXAN_0940	MXAN_2297	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by similarity to PIR:AH2368.	0.697
MXAN_0940	MXAN_5330	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02231.	Conserved hypothetical protein; Identified by match to protein family HMM TIGR02464.	0.417