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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0947RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (277 aa)    
Predicted Functional Partners:
MXAN_0948
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.808
rpoE1
RNA polymerase sigma factor RpoE1; ECF subfamily; identified by similarity to GB:AAC98488.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.664
MXAN_0946
jmjC domain protein; Identified by match to protein family HMM PF02373.
  
    0.501
MXAN_6778
Conserved hypothetical protein; Identified by similarity to GB:BAB53728.1.
 
 
 0.478
MXAN_0949
Identified by match to protein family HMM PF00501.
       0.475
MXAN_2929
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.448
carQ
RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.441
MXAN_0821
Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
  
  
 0.440
MXAN_0510
Putative cell wall surface anchor family protein.
  
   0.438
MXAN_0277
Putative membrane protein.
  
 
   0.425
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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