MXAN_0949 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0949

Identified by match to protein family HMM PF00501. (555 aa)

Predicted Functional Partners:

citZ

0.962

gltA

0.962

aceB

0.961

MXAN_3791

0.942

MXAN_6988

0.942

mmsA

0.934

MXAN_0625

0.934

MXAN_0626

0.934

MXAN_5040

0.934

MXAN_6986

0.934

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0625	MXAN_0626	MXAN_0625	MXAN_0626	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.964
MXAN_0625	MXAN_0949	MXAN_0625	MXAN_0949	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by match to protein family HMM PF00501.	0.934
MXAN_0625	MXAN_6986	MXAN_0625	MXAN_6986	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.909
MXAN_0625	mmsA	MXAN_0625	MXAN_0121	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.922
MXAN_0626	MXAN_0625	MXAN_0626	MXAN_0625	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.964
MXAN_0626	MXAN_0949	MXAN_0626	MXAN_0949	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by match to protein family HMM PF00501.	0.934
MXAN_0626	MXAN_6986	MXAN_0626	MXAN_6986	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.909
MXAN_0626	mmsA	MXAN_0626	MXAN_0121	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.921
MXAN_0949	MXAN_0625	MXAN_0949	MXAN_0625	Identified by match to protein family HMM PF00501.	Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.934
MXAN_0949	MXAN_0626	MXAN_0949	MXAN_0626	Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.934
MXAN_0949	MXAN_3791	MXAN_0949	MXAN_3791	Identified by match to protein family HMM PF00501.	acetyl-CoA acetyltransferase; Identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.942
MXAN_0949	MXAN_5040	MXAN_0949	MXAN_5040	Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.934
MXAN_0949	MXAN_6986	MXAN_0949	MXAN_6986	Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.934
MXAN_0949	MXAN_6988	MXAN_0949	MXAN_6988	Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.942
MXAN_0949	aceB	MXAN_0949	MXAN_6441	Identified by match to protein family HMM PF00501.	Malate synthase A; Identified by match to protein family HMM PF01274; match to protein family HMM TIGR01344.	0.961
MXAN_0949	citZ	MXAN_0949	MXAN_0407	Identified by match to protein family HMM PF00501.	Citrate synthase; Identified by similarity to SP:P39120.	0.962
MXAN_0949	gltA	MXAN_0949	MXAN_3519	Identified by match to protein family HMM PF00501.	Citrate synthase; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.	0.962
MXAN_0949	mmsA	MXAN_0949	MXAN_0121	Identified by match to protein family HMM PF00501.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.934
MXAN_3791	MXAN_0949	MXAN_3791	MXAN_0949	acetyl-CoA acetyltransferase; Identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00501.	0.942
MXAN_3791	MXAN_6988	MXAN_3791	MXAN_6988	acetyl-CoA acetyltransferase; Identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.920