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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1000Putative membrane protein; Identified by match to protein family HMM PF04238. (187 aa)    
Predicted Functional Partners:
MXAN_7388
Identified by match to protein family HMM PF02630.
  
 0.824
MXAN_0602
Cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
    0.657
MXAN_1003
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
 
     0.608
MXAN_6192
Conserved hypothetical protein.
  
     0.586
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    0.564
MXAN_1001
Hypothetical protein; Identified by Glimmer2; putative.
       0.513
MXAN_1002
Putative lipoprotein.
       0.513
MXAN_5026
Vitamin K-dependent gamma-carboxylase-related protein; Identified by similarity to SP:Q07175.
  
     0.504
MXAN_6190
Transporter, solute:sodium symporter (SSS) family; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.485
MXAN_1004
Putative lipoprotein.
       0.463
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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