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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1005FG-GAP repeat protein; Identified by match to protein family HMM PF01839. (1245 aa)    
Predicted Functional Partners:
MXAN_1003
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
 
     0.837
MXAN_6423
Putative membrane protein.
  
     0.775
MXAN_0812
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.774
MXAN_2883
Putative lipoprotein; Identified by match to protein family HMM PF00754.
 
   0.774
MXAN_4396
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.774
MXAN_4440
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
MXAN_6419
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.774
MXAN_5913
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
MXAN_5837
Bacterial Ig-like domain (group 1)/fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF02369.
  
     0.772
MXAN_2186
B12 binding domain protein; Identified by match to protein family HMM PF02310.
  
     0.771
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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