STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutFFormiminoglutamate deiminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022. (462 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224.
 
 
 0.797
MXAN_1011
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ssnA
ssnA protein; Identified by similarity to SP:Q46812; match to protein family HMM PF01979.
  
     0.746
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.645
argE
Acetylornithine deacetylase; Identified by similarity to GB:AAC82366.1; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892.
 
    0.632
MXAN_1009
Putative lipoprotein.
       0.576
hutH
Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225; Belongs to the PAL/histidase family.
 
  
 0.523
MXAN_1008
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.441
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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