MXAN_1049 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1049

Identified by match to protein family HMM PF01757. (395 aa)

Predicted Functional Partners:

MXAN_1048

0.800

MXAN_7325

0.601

MXAN_1025

0.530

MXAN_1047

0.520

MXAN_1041

0.514

MXAN_1043

0.477

MXAN_5509

0.464

MXAN_1037

0.436

MXAN_1036

0.434

MXAN_1035

0.432

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_1025	MXAN_1035	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Putative membrane protein; Identified by match to protein family HMM PF01943.	0.749
MXAN_1025	MXAN_1036	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.678
MXAN_1025	MXAN_1037	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.615
MXAN_1025	MXAN_1041	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Identified by match to protein family HMM PF01757.	0.596
MXAN_1025	MXAN_1043	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Glycosyl transferase; Identified by match to protein family HMM PF00953.	0.471
MXAN_1025	MXAN_1048	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	UDP-glucose 6-dehydrogenase; Identified by similarity to GB:AAQ62125.1; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721.	0.459
MXAN_1025	MXAN_1049	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	Identified by match to protein family HMM PF01757.	0.530
MXAN_1035	MXAN_1025	Putative membrane protein; Identified by match to protein family HMM PF01943.	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	0.749
MXAN_1035	MXAN_1036	Putative membrane protein; Identified by match to protein family HMM PF01943.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.864
MXAN_1035	MXAN_1037	Putative membrane protein; Identified by match to protein family HMM PF01943.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.864
MXAN_1035	MXAN_1041	Putative membrane protein; Identified by match to protein family HMM PF01943.	Identified by match to protein family HMM PF01757.	0.432
MXAN_1035	MXAN_1043	Putative membrane protein; Identified by match to protein family HMM PF01943.	Glycosyl transferase; Identified by match to protein family HMM PF00953.	0.584
MXAN_1035	MXAN_1048	Putative membrane protein; Identified by match to protein family HMM PF01943.	UDP-glucose 6-dehydrogenase; Identified by similarity to GB:AAQ62125.1; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721.	0.747
MXAN_1035	MXAN_1049	Putative membrane protein; Identified by match to protein family HMM PF01943.	Identified by match to protein family HMM PF01757.	0.432
MXAN_1036	MXAN_1025	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Identified by similarity to SP:O52788; match to protein family HMM PF02706.	0.678
MXAN_1036	MXAN_1035	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Putative membrane protein; Identified by match to protein family HMM PF01943.	0.864
MXAN_1036	MXAN_1037	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.904
MXAN_1036	MXAN_1041	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Identified by match to protein family HMM PF01757.	0.534
MXAN_1036	MXAN_1043	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase; Identified by match to protein family HMM PF00953.	0.504
MXAN_1036	MXAN_1049	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Identified by match to protein family HMM PF01757.	0.434