STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frgCSigma-54 dependent DNA-binding response regulator FrgC; Identified by similarity to GB:AAF18103.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (466 aa)    
Predicted Functional Partners:
frgB
Sensor histidine kinase FrgB; Identified by similarity to GB:AAF18102.1; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 
 0.984
frgA
FrgA protein; Identified by similarity to GB:AAF18101.1; match to protein family HMM PF05157.
     
 0.908
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.711
MXAN_2445
Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.
  
  
 0.618
MXAN_5649
Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.
  
  
 0.618
MXAN_1131
Hypothetical protein; Identified by Glimmer2; putative.
       0.568
MXAN_0213
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
      
 0.549
MXAN_5894
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
   
  
 0.545
natA
Sodium ABC tranporter ATP-binding protein NatA; Identified by similarity to SP:P46903; match to protein family HMM PF00005.
      
 0.543
MXAN_0035
ABC transporter, substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM PF03180; match to protein family HMM TIGR01728.
      
 0.527
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.