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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980. (478 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
 0.999
sufD
FeS assembly protein SufD; Identified by similarity to SP:P77689; match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
 
0.997
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.997
MXAN_1157
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
 
  
 0.959
MXAN_1158
Conserved hypothetical protein; Identified by similarity to GB:AAO90857.1; match to protein family HMM PF01883.
 
   
 0.955
MXAN_1152
Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02944.
 
   
 0.876
MXAN_5003
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
  
 
 0.838
MXAN_5155
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
 
 0.833
MXAN_1570
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
 
 0.756
iscU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.685
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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