MXAN_1261 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1261

Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053. (388 aa)

Predicted Functional Partners:

MXAN_0256

0.926

MXAN_0531

0.922

MXAN_3386

0.912

ilvE

0.911

MXAN_1588

0.909

MXAN_7463

0.908

ald

0.907

MXAN_1074

0.906

MXAN_4327

0.906

gdhA

0.906

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0256	MXAN_1261	MXAN_0256	MXAN_1261	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	0.926
MXAN_0256	MXAN_7463	MXAN_0256	MXAN_7463	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Putative ornithine cyclodeaminase; Catalyzes the NAD(+)-dependent oxidative deamination of L- alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate; Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily.	0.906
MXAN_0256	ald	MXAN_0256	MXAN_4146	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.	0.915
MXAN_0531	MXAN_1261	MXAN_0531	MXAN_1261	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	0.922
MXAN_0531	MXAN_3386	MXAN_0531	MXAN_3386	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Putative aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.927
MXAN_0531	MXAN_4327	MXAN_0531	MXAN_4327	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.906
MXAN_0531	gdhA	MXAN_0531	MXAN_5873	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Glutamate dehydrogenase; Identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.906
MXAN_1074	MXAN_1261	MXAN_1074	MXAN_1261	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	0.906
MXAN_1074	MXAN_1588	MXAN_1074	MXAN_1588	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aminotransferase, class IV; Identified by match to protein family HMM PF01063.	0.930
MXAN_1074	ilvE	MXAN_1074	MXAN_2987	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.931
MXAN_1261	MXAN_0256	MXAN_1261	MXAN_0256	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.926
MXAN_1261	MXAN_0531	MXAN_1261	MXAN_0531	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	0.922
MXAN_1261	MXAN_1074	MXAN_1261	MXAN_1074	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.906
MXAN_1261	MXAN_1588	MXAN_1261	MXAN_1588	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Aminotransferase, class IV; Identified by match to protein family HMM PF01063.	0.909
MXAN_1261	MXAN_3386	MXAN_1261	MXAN_3386	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Putative aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.912
MXAN_1261	MXAN_4327	MXAN_1261	MXAN_4327	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.906
MXAN_1261	MXAN_7463	MXAN_1261	MXAN_7463	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Putative ornithine cyclodeaminase; Catalyzes the NAD(+)-dependent oxidative deamination of L- alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate; Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily.	0.908
MXAN_1261	ald	MXAN_1261	MXAN_4146	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.	0.907
MXAN_1261	gdhA	MXAN_1261	MXAN_5873	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Glutamate dehydrogenase; Identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.906
MXAN_1261	ilvE	MXAN_1261	MXAN_2987	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; match to protein family HMM PF01053.	Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.911