STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1272Identified by match to protein family HMM PF00149. (290 aa)    
Predicted Functional Partners:
MXAN_1273
Adenylate and guanylate cyclase catalytic domain protein; Identified by match to protein family HMM PF00211.
     
 0.664
MXAN_5500
GDSL-like lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657.
  
     0.648
MXAN_5863
Conserved hypothetical protein; Identified by similarity to GB:BAB49793.1.
  
     0.617
MXAN_6182
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.578
MXAN_2706
Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.
  
     0.573
MXAN_6594
Putative membrane protein.
  
     0.564
agmK
Adventurous gliding motility protein AgmK; Identified by similarity to GB:AAO22907.1; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
   0.551
MXAN_3438
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.546
MXAN_6595
TPR domain protein; Identified by match to protein family HMM PF07719; match to protein family HMM TIGR01409.
  
    0.531
gluQ
tRNA synthetase class I domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
       0.526
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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