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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1373Identified by match to protein family HMM PF00850. (299 aa)    
Predicted Functional Partners:
MXAN_3606
Putative sensor histidine kinase; Identified by match to protein family HMM PF02518.
    
 0.821
MXAN_1890
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.776
MXAN_1372
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.714
MXAN_0613
Alkaline ceramidase; Identified by similarity to GB:BAA88409.1; match to protein family HMM PF04734.
    
 0.633
MXAN_4930
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
   
 0.558
MXAN_1374
Hypothetical protein; Identified by Glimmer2; putative.
       0.536
MXAN_3932
Polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801.
   
 0.491
MXAN_2378
SET domain protein; Identified by match to protein family HMM PF00856.
  
 0.483
MXAN_5708
Putative methyltransferase; Identified by similarity to PDB:1N3J_A.0.
  
 0.482
MXAN_1371
peptidyl-tRNA hydrolase domain protein; Identified by match to protein family HMM PF00472.
       0.404
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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