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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1397PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF03130. (531 aa)    
Predicted Functional Partners:
agmK
Adventurous gliding motility protein AgmK; Identified by similarity to GB:AAO22907.1; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
   0.772
MXAN_1162
Putative lipoprotein.
  
     0.765
MXAN_5319
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
 
   0.764
MXAN_4155
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.760
MXAN_3550
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.759
aglU
Adventurous gliding motility protein AglU; Identified by similarity to GB:AAO22920.1.
  
     0.757
MXAN_3838
PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF03130.
  
     0.757
MXAN_2805
PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF03130.
  
    0.755
MXAN_0634
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.754
aglZ
Adventurous gliding motility protein AglZ; Required for adventurous-gliding motility (A motility), in response to environmental signals sensed by the frz chemosensory system. Forms ordered clusters that span the cell length and that remain stationary relative to the surface across which the cells move, serving as anchor points (focal, transient adhesion sites) that allow the bacterium to move forward. Clusters disassemble at the lagging cell pole.
 
     0.750
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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