MXAN_1478 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1478

Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family. (165 aa)

Predicted Functional Partners:

rimO

0.802

MXAN_1477

0.774

rnj

0.763

metK

0.498

MXAN_1480

0.423

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1477	MXAN_1478	MXAN_1477	MXAN_1478	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	0.774
MXAN_1477	MXAN_1480	MXAN_1477	MXAN_1480	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	0.421
MXAN_1477	rimO	MXAN_1477	MXAN_1476	Hypothetical protein; Identified by Glimmer2; putative.	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.773
MXAN_1477	rnj	MXAN_1477	MXAN_1479	Hypothetical protein; Identified by Glimmer2; putative.	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.714
MXAN_1478	MXAN_1477	MXAN_1478	MXAN_1477	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	Hypothetical protein; Identified by Glimmer2; putative.	0.774
MXAN_1478	MXAN_1480	MXAN_1478	MXAN_1480	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	0.423
MXAN_1478	metK	MXAN_1478	MXAN_6517	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.498
MXAN_1478	rimO	MXAN_1478	MXAN_1476	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.802
MXAN_1478	rnj	MXAN_1478	MXAN_1479	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.763
MXAN_1480	MXAN_1477	MXAN_1480	MXAN_1477	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	Hypothetical protein; Identified by Glimmer2; putative.	0.421
MXAN_1480	MXAN_1478	MXAN_1480	MXAN_1478	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	0.423
MXAN_1480	rimO	MXAN_1480	MXAN_1476	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.426
MXAN_1480	rnj	MXAN_1480	MXAN_1479	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.463
metK	MXAN_1478	MXAN_6517	MXAN_1478	S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	0.498
rimO	MXAN_1477	MXAN_1476	MXAN_1477	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
rimO	MXAN_1478	MXAN_1476	MXAN_1478	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	0.802
rimO	MXAN_1480	MXAN_1476	MXAN_1480	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721.	0.426
rimO	rnj	MXAN_1476	MXAN_1479	MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.772
rnj	MXAN_1477	MXAN_1479	MXAN_1477	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	Hypothetical protein; Identified by Glimmer2; putative.	0.714
rnj	MXAN_1478	MXAN_1479	MXAN_1478	Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	Conserved hypothetical protein; Identified by similarity to GB:AAR36595.1; match to protein family HMM PF04461; Belongs to the UPF0234 family.	0.763