MXAN_1484 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1484

ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family. (966 aa)

Predicted Functional Partners:

rpsJ

0.909

clpP

0.866

clpP-2

0.865

rpmA

0.830

MXAN_1123

0.827

rplM

0.809

rpmE

0.806

rpsG

0.794

rplT

0.793

prmC

0.789

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1123	MXAN_1484	MXAN_1123	MXAN_1484	Putative S-adenosyl-L-methionine: L-methionine S-methyltransferase; Identified by similarity to GB:AAD49573.1; match to protein family HMM PF00155.	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	0.827
MXAN_1484	MXAN_1123	MXAN_1484	MXAN_1123	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Putative S-adenosyl-L-methionine: L-methionine S-methyltransferase; Identified by similarity to GB:AAD49573.1; match to protein family HMM PF00155.	0.827
MXAN_1484	clpP	MXAN_1484	MXAN_2014	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.866
MXAN_1484	clpP-2	MXAN_1484	MXAN_6438	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.865
MXAN_1484	prmC	MXAN_1484	MXAN_4908	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Putative protein methyltransferase HemK; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.	0.789
MXAN_1484	rplM	MXAN_1484	MXAN_1993	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.809
MXAN_1484	rplT	MXAN_1484	MXAN_3593	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.793
MXAN_1484	rpmA	MXAN_1484	MXAN_1470	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.830
MXAN_1484	rpmE	MXAN_1484	MXAN_5139	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein L31; Binds the 23S rRNA.	0.806
MXAN_1484	rpsG	MXAN_1484	MXAN_3296	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.794
MXAN_1484	rpsJ	MXAN_1484	MXAN_3299	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.909
clpP	MXAN_1484	MXAN_2014	MXAN_1484	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	0.866
clpP	rplT	MXAN_2014	MXAN_3593	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.473
clpP	rpsG	MXAN_2014	MXAN_3296	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.414
clpP-2	MXAN_1484	MXAN_6438	MXAN_1484	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	0.865
clpP-2	rplT	MXAN_6438	MXAN_3593	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.473
clpP-2	rpsG	MXAN_6438	MXAN_3296	ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.414
prmC	MXAN_1484	MXAN_4908	MXAN_1484	Putative protein methyltransferase HemK; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	0.789
rplM	MXAN_1484	MXAN_1993	MXAN_1484	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	ClpA/B family protein; Identified by similarity to SP:Q9RA63; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.	0.809
rplM	rplT	MXAN_1993	MXAN_3593	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996