STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1497PQQ enzyme repeat domain protein; Identified by match to protein family HMM PF01011. (357 aa)    
Predicted Functional Partners:
MXAN_1518
Putative lipoprotein; Identified by similarity to PIR:C83171.
  
     0.761
bamD
Putative competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.710
MXAN_4728
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
 
 0.680
MXAN_5763
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
 
 0.680
MXAN_3374
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
  
 
 0.474
MXAN_0468
Peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639.
   
 
 0.469
MXAN_0469
Putative foldase protein PrsA; Identified by similarity to SP:P24327; match to protein family HMM PF00639.
   
 
 0.469
hisS
histidyl-tRNA synthetase; Identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
  
    0.440
MXAN_1188
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.423
MXAN_2323
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
  
 
 0.423
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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