MXAN_1548 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1548

Putative membrane spanning protein. (240 aa)

Predicted Functional Partners:

MXAN_1547

0.971

MXAN_1549

0.955

MXAN_4878

0.879

MXAN_4880

0.826

MXAN_1550

0.784

MXAN_6475

0.705

MXAN_3208

0.702

MXAN_4074

0.589

MXAN_1546

0.568

MXAN_4102

0.561

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_1546	MXAN_1547	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.576
MXAN_1546	MXAN_1548	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	Putative membrane spanning protein.	0.568
MXAN_1546	MXAN_1549	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	Putative membrane protein.	0.566
MXAN_1546	MXAN_1550	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	Hypothetical protein; Identified by Glimmer2; putative.	0.566
MXAN_1547	MXAN_1546	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	0.576
MXAN_1547	MXAN_1548	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative membrane spanning protein.	0.971
MXAN_1547	MXAN_1549	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative membrane protein.	0.942
MXAN_1547	MXAN_1550	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
MXAN_1547	MXAN_4880	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical protein.	0.799
MXAN_1548	MXAN_1546	Putative membrane spanning protein.	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	0.568
MXAN_1548	MXAN_1547	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.971
MXAN_1548	MXAN_1549	Putative membrane spanning protein.	Putative membrane protein.	0.955
MXAN_1548	MXAN_1550	Putative membrane spanning protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.784
MXAN_1548	MXAN_3208	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.702
MXAN_1548	MXAN_4074	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.589
MXAN_1548	MXAN_4102	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.561
MXAN_1548	MXAN_4878	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.879
MXAN_1548	MXAN_4880	Putative membrane spanning protein.	Conserved hypothetical protein.	0.826
MXAN_1548	MXAN_6475	Putative membrane spanning protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.705
MXAN_1549	MXAN_1546	Putative membrane protein.	Conserved hypothetical protein; Identified by similarity to GB:CAG35984.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777.	0.566