MXAN_1562 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_1562

Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family. (158 aa)

Predicted Functional Partners:

ahpC

0.822

MXAN_1561

0.773

clpS

0.701

MXAN_1560

0.620

katE

0.619

ohr

0.573

MXAN_4239

0.573

otsAB

0.563

MXAN_5478

0.529

sodB

0.523

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1560	MXAN_1561	MXAN_1560	MXAN_1561	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Putative lipoprotein.	0.608
MXAN_1560	MXAN_1562	MXAN_1560	MXAN_1562	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	0.620
MXAN_1560	ahpC	MXAN_1560	MXAN_1564	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	Alkyl hydroperoxide reductase C; Identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578.	0.442
MXAN_1561	MXAN_1560	MXAN_1561	MXAN_1560	Putative lipoprotein.	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	0.608
MXAN_1561	MXAN_1562	MXAN_1561	MXAN_1562	Putative lipoprotein.	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	0.773
MXAN_1561	ahpC	MXAN_1561	MXAN_1564	Putative lipoprotein.	Alkyl hydroperoxide reductase C; Identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578.	0.493
MXAN_1562	MXAN_1560	MXAN_1562	MXAN_1560	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Aminotransferase, class I; Identified by match to protein family HMM PF00155.	0.620
MXAN_1562	MXAN_1561	MXAN_1562	MXAN_1561	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Putative lipoprotein.	0.773
MXAN_1562	MXAN_4239	MXAN_1562	MXAN_4239	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Hypothetical protein; Identified by Glimmer2; putative.	0.573
MXAN_1562	MXAN_5478	MXAN_1562	MXAN_5478	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.529
MXAN_1562	ahpC	MXAN_1562	MXAN_1564	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Alkyl hydroperoxide reductase C; Identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578.	0.822
MXAN_1562	clpS	MXAN_1562	MXAN_6025	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.	0.701
MXAN_1562	katE	MXAN_1562	MXAN_6188	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.619
MXAN_1562	ohr	MXAN_1562	MXAN_0655	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Organic hydroperoxide resistance protein; Identified by similarity to SP:O68390; match to protein family HMM PF02566.	0.573
MXAN_1562	otsAB	MXAN_1562	MXAN_1192	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Alpha,alpha-trehalose-phosphate synthase/trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.	0.563
MXAN_1562	sodB	MXAN_1562	MXAN_4826	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.523
MXAN_4239	MXAN_1562	MXAN_4239	MXAN_1562	Hypothetical protein; Identified by Glimmer2; putative.	Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.	0.573
MXAN_4239	MXAN_5478	MXAN_4239	MXAN_5478	Hypothetical protein; Identified by Glimmer2; putative.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.408
MXAN_4239	katE	MXAN_4239	MXAN_6188	Hypothetical protein; Identified by Glimmer2; putative.	Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.717
MXAN_4239	otsAB	MXAN_4239	MXAN_1192	Hypothetical protein; Identified by Glimmer2; putative.	Alpha,alpha-trehalose-phosphate synthase/trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.	0.701