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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1601Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487. (325 aa)    
Predicted Functional Partners:
MXAN_1602
Putative O-methyltransferase; Identified by match to protein family HMM PF00891; match to protein family HMM PF05175.
 
     0.775
MXAN_1179
Conserved hypothetical protein.
  
     0.741
MXAN_6725
PDZ domain protein; Identified by match to protein family HMM PF00595.
  
     0.706
MXAN_4014
BNR/Asp-box repeat domain protein.
  
     0.702
MXAN_2297
Conserved hypothetical protein; Identified by similarity to PIR:AH2368.
  
     0.694
MXAN_1365
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.689
MXAN_3168
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.668
MXAN_5528
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.650
MXAN_4073
Putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.645
MXAN_0255
Peptidase homolog, M20 family; Lacks one of five conserved zinc-binding residues characteristic of the M20 family, so peptidase activity is questionable; identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
  
     0.603
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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