STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1645Putative membrane protein; Identified by match to protein family HMM PF07947. (309 aa)    
Predicted Functional Partners:
MXAN_0840
Putative membrane protein; Identified by similarity to GB:AAN70784.1.
 
     0.740
MXAN_6843
Putative membrane protein; Identified by similarity to GB:AAN48605.1.
 
     0.738
MXAN_6907
Conserved hypothetical protein; Identified by similarity to GB:BAC74157.1.
 
     0.713
MXAN_1644
Putative epoxide hydrolase; Identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561.
       0.565
MXAN_7348
Conserved hypothetical protein.
  
     0.554
carF
Carotenoid synthesis regulator CarF; Identified by similarity to GB:AAO22861.1.
 
     0.498
MXAN_7231
Conserved hypothetical protein; Identified by similarity to GB:BAB52775.1.
 
     0.475
MXAN_1643
Conserved hypothetical protein; Identified by similarity to GB:CAC41796.1; match to protein family HMM PF02082.
       0.450
MXAN_6284
Putative membrane protein; Identified by similarity to GB:CAD17881.1.
 
     0.419
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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