STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1688Identified by match to protein family HMM PF00593; match to protein family HMM PF03544; match to protein family HMM PF07715; match to protein family HMM TIGR01352. (869 aa)    
Predicted Functional Partners:
MXAN_6845
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
 
 
0.841
MXAN_0821
Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
 
 
0.802
MXAN_0856
Identified by match to protein family HMM PF00593; match to protein family HMM PF03544; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
 
 
0.794
MXAN_6997
tonB domain protein; Identified by match to protein family HMM PF07715; match to protein family HMM TIGR01352.
 
 
0.788
MXAN_0272
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.764
MXAN_6967
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
 
  
 0.705
MXAN_6044
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.691
MXAN_0518
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.686
MXAN_3004
Conserved hypothetical protein.
 
 
 0.683
MXAN_1689
Conserved hypothetical protein; Identified by similarity to GB:AAG31133.1.
  
    0.678
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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