STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_1701Identified by match to protein family HMM TIGR01413. (437 aa)    
Predicted Functional Partners:
MXAN_1703
Conserved hypothetical protein; Identified by similarity to GB:AAS02704.1.
  
    0.807
MXAN_1702
Hypothetical protein; Identified by Glimmer2; putative.
       0.801
MXAN_5946
Cytochrome c family protein/iron permease, FTR1 family; Identified by match to protein family HMM PF00034; match to protein family HMM PF03239.
 
  
 0.796
MXAN_2367
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.627
MXAN_0522
Putative lipoprotein.
  
  
 0.622
MXAN_6840
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.622
MXAN_6182
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.563
MXAN_2290
Putative lipoprotein; Identified by match to protein family HMM PF07691; match to protein family HMM TIGR02148; match to protein family HMM TIGR02232.
  
     0.551
MXAN_7313
Identified by match to protein family HMM PF00753.
  
     0.529
MXAN_1198
Conserved hypothetical protein; Identified by similarity to GB:BAC89535.1; match to protein family HMM PF05685.
  
     0.515
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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