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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2032Conserved hypothetical protein; Identified by match to protein family HMM PF03602; Belongs to the methyltransferase superfamily. (342 aa)    
Predicted Functional Partners:
MXAN_1458
THUMP domain/methyltransferase domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF02926; Belongs to the methyltransferase superfamily.
  
 0.940
MXAN_6018
Identified by match to protein family HMM PF01170.
  
 0.930
MXAN_1988
Conserved hypothetical protein; Identified by similarity to GB:AAM24738.1.
  
     0.733
MXAN_2033
uracil-DNA glycosylase, family 4; Identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758.
       0.572
MXAN_2034
Identified by match to protein family HMM PF00378.
     
 0.458
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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