MXAN_2281 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2281

Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865. (208 aa)

Predicted Functional Partners:

MXAN_2280

0.989

gmk

0.553

phoU

0.552

rnpA

0.540

rpmB

0.525

rpmB-2

0.525

MXAN_2279

0.517

scpA

0.472

MXAN_1578

0.448

MXAN_1784

0.448

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1578	MXAN_2281	MXAN_1578	MXAN_2281	Identified by match to protein family HMM PF00753.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.448
MXAN_1784	MXAN_2281	MXAN_1784	MXAN_2281	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.448
MXAN_2279	MXAN_2280	MXAN_2279	MXAN_2280	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF01384.	0.517
MXAN_2279	MXAN_2281	MXAN_2279	MXAN_2281	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.517
MXAN_2280	MXAN_2279	MXAN_2280	MXAN_2279	Identified by match to protein family HMM PF01384.	Hypothetical protein; Identified by Glimmer2; putative.	0.517
MXAN_2280	MXAN_2281	MXAN_2280	MXAN_2281	Identified by match to protein family HMM PF01384.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.989
MXAN_2281	MXAN_1578	MXAN_2281	MXAN_1578	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Identified by match to protein family HMM PF00753.	0.448
MXAN_2281	MXAN_1784	MXAN_2281	MXAN_1784	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Hypothetical protein; Identified by Glimmer2; putative.	0.448
MXAN_2281	MXAN_2279	MXAN_2281	MXAN_2279	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Hypothetical protein; Identified by Glimmer2; putative.	0.517
MXAN_2281	MXAN_2280	MXAN_2281	MXAN_2280	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Identified by match to protein family HMM PF01384.	0.989
MXAN_2281	gmk	MXAN_2281	MXAN_4705	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.553
MXAN_2281	phoU	MXAN_2281	MXAN_4792	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	0.552
MXAN_2281	rnpA	MXAN_2281	MXAN_7511	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.540
MXAN_2281	rpmB	MXAN_2281	MXAN_2695	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.525
MXAN_2281	rpmB-2	MXAN_2281	MXAN_6526	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.525
MXAN_2281	scpA	MXAN_2281	MXAN_3841	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.	0.472
gmk	MXAN_2281	MXAN_4705	MXAN_2281	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.553
gmk	rnpA	MXAN_4705	MXAN_7511	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.455
phoU	MXAN_2281	MXAN_4792	MXAN_2281	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.552
rnpA	MXAN_2281	MXAN_7511	MXAN_2281	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	Conserved hypothetical protein; Identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865.	0.540