MXAN_2364 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2364

Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719. (469 aa)

Predicted Functional Partners:

MXAN_2321

0.600

MXAN_4187

0.519

MXAN_6621

0.450

MXAN_6601

0.428

MXAN_2365

0.420

MXAN_2796

0.408

MXAN_3779

0.408

MXAN_0659

0.401

MXAN_2366

0.400

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0659	MXAN_2364	Putative lipoprotein; Identified by match to protein family HMM PF07969.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.401
MXAN_0659	MXAN_6601	Putative lipoprotein; Identified by match to protein family HMM PF07969.	Peptidase, S9C (acylaminoacyl-peptidase) subfamily; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.	0.430
MXAN_2321	MXAN_2364	Beta-lactamase; Identified by match to protein family HMM PF00144.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.600
MXAN_2364	MXAN_0659	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative lipoprotein; Identified by match to protein family HMM PF07969.	0.401
MXAN_2364	MXAN_2321	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.600
MXAN_2364	MXAN_2365	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to GB:AAK22545.1.	0.420
MXAN_2364	MXAN_2366	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative lipoprotein.	0.400
MXAN_2364	MXAN_2796	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM TIGR01733.	0.408
MXAN_2364	MXAN_3779	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.408
MXAN_2364	MXAN_4187	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to SP:P40407; match to protein family HMM PF07075.	0.519
MXAN_2364	MXAN_6601	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Peptidase, S9C (acylaminoacyl-peptidase) subfamily; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.	0.428
MXAN_2364	MXAN_6621	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	Identified by match to protein family HMM PF00933.	0.450
MXAN_2365	MXAN_2364	Conserved hypothetical protein; Identified by similarity to GB:AAK22545.1.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.420
MXAN_2365	MXAN_2366	Conserved hypothetical protein; Identified by similarity to GB:AAK22545.1.	Putative lipoprotein.	0.765
MXAN_2366	MXAN_2364	Putative lipoprotein.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.400
MXAN_2366	MXAN_2365	Putative lipoprotein.	Conserved hypothetical protein; Identified by similarity to GB:AAK22545.1.	0.765
MXAN_2796	MXAN_2364	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM TIGR01733.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.408
MXAN_2796	MXAN_3779	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM TIGR01733.	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.990
MXAN_3779	MXAN_2364	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	Beta-lactamase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.408
MXAN_3779	MXAN_2796	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM TIGR01733.	0.990