MXAN_2405 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2405

Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728. (631 aa)

Predicted Functional Partners:

MXAN_2353

0.602

MXAN_2971

0.531

slyD

0.522

atpB

0.456

MXAN_1549

0.433

MXAN_4279

0.419

MXAN_2706

0.411

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1549	MXAN_2353	MXAN_1549	MXAN_2353	Putative membrane protein.	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	0.600
MXAN_1549	MXAN_2405	MXAN_1549	MXAN_2405	Putative membrane protein.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.433
MXAN_2353	MXAN_1549	MXAN_2353	MXAN_1549	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	Putative membrane protein.	0.600
MXAN_2353	MXAN_2405	MXAN_2353	MXAN_2405	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.602
MXAN_2353	MXAN_4279	MXAN_2353	MXAN_4279	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	Putative helicase; Identified by match to protein family HMM PF00271.	0.747
MXAN_2405	MXAN_1549	MXAN_2405	MXAN_1549	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	Putative membrane protein.	0.433
MXAN_2405	MXAN_2353	MXAN_2405	MXAN_2353	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	0.602
MXAN_2405	MXAN_2706	MXAN_2405	MXAN_2706	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	0.411
MXAN_2405	MXAN_2971	MXAN_2405	MXAN_2971	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	Conserved hypothetical protein; Identified by similarity to GB:CAE79771.1.	0.531
MXAN_2405	MXAN_4279	MXAN_2405	MXAN_4279	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	Putative helicase; Identified by match to protein family HMM PF00271.	0.419
MXAN_2405	atpB	MXAN_2405	MXAN_0402	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	0.456
MXAN_2405	slyD	MXAN_2405	MXAN_2404	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; Identified by similarity to SP:P30856; match to protein family HMM PF00254.	0.522
MXAN_2706	MXAN_2405	MXAN_2706	MXAN_2405	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.411
MXAN_2971	MXAN_2405	MXAN_2971	MXAN_2405	Conserved hypothetical protein; Identified by similarity to GB:CAE79771.1.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.531
MXAN_4279	MXAN_2353	MXAN_4279	MXAN_2353	Putative helicase; Identified by match to protein family HMM PF00271.	Putative oligopeptide transporter; Identified by match to protein family HMM PF03169.	0.747
MXAN_4279	MXAN_2405	MXAN_4279	MXAN_2405	Putative helicase; Identified by match to protein family HMM PF00271.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.419
atpB	MXAN_2405	MXAN_0402	MXAN_2405	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.456
slyD	MXAN_2405	MXAN_2404	MXAN_2405	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; Identified by similarity to SP:P30856; match to protein family HMM PF00254.	Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728.	0.522