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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2418Putative endonuclease. (172 aa)    
Predicted Functional Partners:
MXAN_3571
Conserved hypothetical protein.
 
 
  0.685
MXAN_3570
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.570
MXAN_0582
Conserved hypothetical protein.
   
    0.560
pbpC
Penicillin-binding protein 1C; Identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073.
       0.508
MXAN_1143
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.485
MXAN_0585
Conserved hypothetical protein; Identified by similarity to SP:P76464; match to protein family HMM PF01835.
   
    0.478
MXAN_2417
Conserved hypothetical protein; Identified by similarity to GB:AAM40338.1; match to protein family HMM PF01835.
   
    0.478
MXAN_2974
Conserved hypothetical protein; Identified by match to protein family HMM PF01835.
   
    0.478
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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