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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2438Type III secretion apparatus protein, YscI/HrpB family. (138 aa)    
Predicted Functional Partners:
MXAN_2436
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.702
MXAN_2437
RNA polymerase sigma factor, FliA/WhiG/SigD family; Identified by similarity to SP:P31804; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
       0.701
MXAN_2435
TPR domain protein.
  
    0.661
MXAN_2434
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
MXAN_2439
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; Identified by similarity to GB:AAK81934.1; match to protein family HMM PF01514.
       0.508
MXAN_2433
Hypothetical protein; Identified by Glimmer2; putative.
       0.418
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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