Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2474Conserved hypothetical protein; Identified by similarity to PIR:AC2435; match to protein family HMM PF01882. (427 aa)    
Predicted Functional Partners:
MXAN_2475
Putative transcriptional regulator; Identified by similarity to GB:AAK22552.1; match to protein family HMM PF07726; match to protein family HMM PF07728.
  
 0.909
MXAN_2467
RDD domain protein; Identified by match to protein family HMM PF06271.
 
    0.849
MXAN_3116
RDD family protein; Identified by match to protein family HMM PF06271.
 
    0.848
MXAN_2472
Putative membrane protein; Identified by similarity to GB:BAC08611.1; match to protein family HMM PF01944.
 
  
 0.810
MXAN_3115
Conserved hypothetical protein.
 
  
 0.810
MXAN_2477
Putative membrane protein.
 
     0.798
MXAN_2476
Hypothetical protein; Identified by Glimmer2; putative.
       0.727
MXAN_2478
Hypothetical protein; Identified by Glimmer2; putative.
       0.722
MXAN_6473
Conserved hypothetical protein; Identified by match to protein family HMM PF01882.
  
     0.622
MXAN_5666
ATPase, AAA family; Identified by match to protein family HMM PF07726.
  
 0.613
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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