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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2476Hypothetical protein; Identified by Glimmer2; putative. (426 aa)    
Predicted Functional Partners:
MXAN_2477
Putative membrane protein.
       0.787
MXAN_2478
Hypothetical protein; Identified by Glimmer2; putative.
       0.784
MXAN_2475
Putative transcriptional regulator; Identified by similarity to GB:AAK22552.1; match to protein family HMM PF07726; match to protein family HMM PF07728.
       0.778
MXAN_2474
Conserved hypothetical protein; Identified by similarity to PIR:AC2435; match to protein family HMM PF01882.
       0.728
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.610
sppA
Signal peptide peptidase SppA, 36K type; Identified by similarity to SP:P08395.
       0.412
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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