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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspCGeneral secretion pathway protein C. (314 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein D; Identified by similarity to GB:AAD05173.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
 
 
 0.989
gspF
General secretion pathway protein F; Identified by similarity to GB:AAD05175.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.946
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.932
MXAN_2332
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 
0.908
MXAN_2506
Putative general secretion pathway protein J; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.900
gspG
General secretion pathway protein G; Identified by similarity to GB:AAD05177.1; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
 
  
 0.899
MXAN_2505
Putative general secretory pathway protein K.
 
  
 0.859
gspG-2
General secretion pathway protein G; Identified by similarity to GB:AAD05177.1; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
 
  
 0.817
pilQ
Type IV pilus secretin PilQ; Identified by similarity to GB:AAD04923.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
  
 0.785
MXAN_2509
Conserved hypothetical protein.
 
  
 0.709
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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