MXAN_2532 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2532

Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107. (337 aa)

Predicted Functional Partners:

MXAN_3779

0.577

MXAN_2531

0.560

MXAN_3935

0.512

MXAN_3932

0.480

MXAN_2530

0.460

MXAN_4402

0.460

MXAN_4527

0.457

MXAN_2152

0.455

MXAN_3462

0.453

MXAN_4001

0.416

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_2152	MXAN_2532	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.455
MXAN_2152	MXAN_3935	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Non-ribosomal peptide synthase/polyketide synthase Ta1; Identified by similarity to GB:CAB38084.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.425
MXAN_2530	MXAN_2531	EAL domain protein; Identified by match to protein family HMM PF00563.	Conserved domain protein; Identified by similarity to GB:AAF80812.1.	0.623
MXAN_2530	MXAN_2532	EAL domain protein; Identified by match to protein family HMM PF00563.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.460
MXAN_2531	MXAN_2530	Conserved domain protein; Identified by similarity to GB:AAF80812.1.	EAL domain protein; Identified by match to protein family HMM PF00563.	0.623
MXAN_2531	MXAN_2532	Conserved domain protein; Identified by similarity to GB:AAF80812.1.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.560
MXAN_2532	MXAN_2152	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.455
MXAN_2532	MXAN_2530	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	EAL domain protein; Identified by match to protein family HMM PF00563.	0.460
MXAN_2532	MXAN_2531	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Conserved domain protein; Identified by similarity to GB:AAF80812.1.	0.560
MXAN_2532	MXAN_3462	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.453
MXAN_2532	MXAN_3779	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.577
MXAN_2532	MXAN_3932	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.480
MXAN_2532	MXAN_3935	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Non-ribosomal peptide synthase/polyketide synthase Ta1; Identified by similarity to GB:CAB38084.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.512
MXAN_2532	MXAN_4001	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Non-ribosomal peptide synthase/polyketide synthase; Identified by similarity to GB:AAO23333.1; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.416
MXAN_2532	MXAN_4402	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Non-ribosomal peptide synthetase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.460
MXAN_2532	MXAN_4527	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase; Identified by similarity to GB:AAK57187.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.457
MXAN_3462	MXAN_2532	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.453
MXAN_3462	MXAN_3779	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.999
MXAN_3462	MXAN_3932	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.999
MXAN_3462	MXAN_3935	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	Non-ribosomal peptide synthase/polyketide synthase Ta1; Identified by similarity to GB:CAB38084.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733.	0.999