MXAN_2559 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2559

Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814. (255 aa)

Predicted Functional Partners:

gcp

0.972

MXAN_4348

0.943

birA

0.929

MXAN_2557

0.826

rlpA

0.803

MXAN_2556

0.707

uppS

0.674

MXAN_3846

0.667

MXAN_2560

0.626

MXAN_1545

0.623

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1545	MXAN_2559	MXAN_1545	MXAN_2559	Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	0.623
MXAN_1545	MXAN_4348	MXAN_1545	MXAN_4348	Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	Conserved hypothetical protein TIGR00150; Identified by similarity to GB:AAR35177.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.	0.697
MXAN_1545	gcp	MXAN_1545	MXAN_2051	Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.650
MXAN_2556	MXAN_2557	MXAN_2556	MXAN_2557	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	0.827
MXAN_2556	MXAN_2559	MXAN_2556	MXAN_2559	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	0.707
MXAN_2556	MXAN_2560	MXAN_2556	MXAN_2560	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.585
MXAN_2556	rlpA	MXAN_2556	MXAN_2558	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	Putative lipoprotein, RlpA family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.656
MXAN_2556	uppS	MXAN_2556	MXAN_2555	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.988
MXAN_2557	MXAN_2556	MXAN_2557	MXAN_2556	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	0.827
MXAN_2557	MXAN_2559	MXAN_2557	MXAN_2559	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	0.826
MXAN_2557	MXAN_2560	MXAN_2557	MXAN_2560	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.621
MXAN_2557	rlpA	MXAN_2557	MXAN_2558	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	Putative lipoprotein, RlpA family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.780
MXAN_2557	uppS	MXAN_2557	MXAN_2555	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.856
MXAN_2559	MXAN_1545	MXAN_2559	MXAN_1545	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	0.623
MXAN_2559	MXAN_2556	MXAN_2559	MXAN_2556	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Putative phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	0.707
MXAN_2559	MXAN_2557	MXAN_2559	MXAN_2557	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Peptidase, M50A (S2P protease) subfamily; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.	0.826
MXAN_2559	MXAN_2560	MXAN_2559	MXAN_2560	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.626
MXAN_2559	MXAN_3846	MXAN_2559	MXAN_3846	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.	0.667
MXAN_2559	MXAN_4348	MXAN_2559	MXAN_4348	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	Conserved hypothetical protein TIGR00150; Identified by similarity to GB:AAR35177.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.	0.943
MXAN_2559	birA	MXAN_2559	MXAN_4152	Peptidase family M22, nonpeptidase-like protein; Identified by match to protein family HMM PF00814.	BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.929