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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2754Peptidase, M4 (thermolysin) family; Identified by similarity to SP:P05806; similarity to GB:AAB62279.1; match to protein family HMM PF01447; match to protein family HMM PF01483; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504. (725 aa)    
Predicted Functional Partners:
MXAN_5217
Identified by match to protein family HMM PF03098.
  
  
 0.717
MXAN_6008
Chitinase, class II; Identified by similarity to GB:AAK69033.1; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839.
  
 0.662
MXAN_4160
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.567
MXAN_4955
Conserved hypothetical protein; Identified by similarity to SP:Q9A4D0; match to protein family HMM PF05114.
   
    0.567
MXAN_3884
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.562
MXAN_3149
Peptidase, M6 (immune inhibitor A) family; Identified by similarity to SP:P23382; match to protein family HMM PF05547.
  
   
 0.508
MXAN_2938
Identified by match to protein family HMM PF03067.
  
  
 0.489
MXAN_2885
Conserved hypothetical protein; Identified by similarity to GB:BAC70327.1.
  
     0.487
MXAN_2756
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.464
MXAN_0411
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.458
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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