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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2832ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (260 aa)    
Predicted Functional Partners:
MXAN_2833
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.995
MXAN_2831
Putative lipoprotein; Identified by similarity to GB:AAK24600.1.
 
  
 0.972
MXAN_0037
Putative aliphatic sulfonates ABC transporter, ATP-binding protein; Identified by similarity to GB:BAD39859.1; match to protein family HMM PF00005.
  
 0.926
MXAN_0035
ABC transporter, substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM PF03180; match to protein family HMM TIGR01728.
 
  
 0.734
MXAN_5702
Conserved hypothetical protein; Identified by similarity to GB:BAB48671.1.
 
  
 0.671
MXAN_2834
Hypothetical protein; Identified by Glimmer2; putative.
       0.580
MXAN_0596
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 0.498
MXAN_2828
Transposase, IS66 family, truncated.
       0.447
MXAN_2829
Hypothetical protein; Identified by Glimmer2; putative.
       0.447
MXAN_2830
Conserved hypothetical protein.
       0.447
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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