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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2902Sigma-54 dependent transcriptional regulator, Fis family; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (599 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.773
MXAN_2895
ATPase, AAA family; Identified by match to protein family HMM PF07728.
       0.492
MXAN_2896
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
MXAN_2897
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
MXAN_2898
ATP-dependent metalloprotease, FtsH family; Identified by similarity to SP:P37476; match to protein family HMM PF00004; match to protein family HMM PF01434; Belongs to the AAA ATPase family.
       0.492
MXAN_2899
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
MXAN_2900
Hypothetical protein; Identified by Glimmer2; putative.
       0.492
MXAN_2901
Putative radical SAM domain protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.492
MXAN_2894
Hypothetical protein; Identified by Glimmer2; putative.
       0.452
MXAN_7024
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM TIGR02266.
     
 0.434
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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