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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2948Cation ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950. (290 aa)    
Predicted Functional Partners:
MXAN_2949
Cation ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.998
MXAN_2951
ABC transporter, periplasmic substrate binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.987
MXAN_2952
Conserved hypothetical protein; Identified by similarity to SP:O67918.
 
     0.917
MXAN_2950
Putative lipoprotein.
       0.781
MXAN_5503
Polar amino acid transport system substrate-binding protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
 
 0.542
MXAN_1845
Putative phage late control gene D protein.
  
     0.533
MXAN_0597
Glycine betaine/L-proline ABC transporter, permease and substrate-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
  
  
  0.492
MXAN_6903
Identified by match to protein family HMM PF02274.
  
     0.476
MXAN_1883
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.473
MXAN_7127
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
    0.458
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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