MXAN_2984 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_2984

DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. (343 aa)

Predicted Functional Partners:

MXAN_3199

0.803

MXAN_2983

0.781

MXAN_2082

0.687

MXAN_3025

0.668

MXAN_3697

0.606

MXAN_0279

0.583

rbfA

0.583

MXAN_3770

0.574

MXAN_6627

0.570

MXAN_2427

0.566

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0279	MXAN_2984	MXAN_0279	MXAN_2984	Putative ribosome-binding factor A; Identified by similarity to SP:P09170; match to protein family HMM PF02033.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.583
MXAN_2082	MXAN_2984	MXAN_2082	MXAN_2984	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.687
MXAN_2427	MXAN_2984	MXAN_2427	MXAN_2984	Hypothetical protein; Identified by Glimmer2; putative.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.566
MXAN_2427	MXAN_3199	MXAN_2427	MXAN_3199	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to SP:Q58408; match to protein family HMM PF02457.	0.515
MXAN_2427	MXAN_3697	MXAN_2427	MXAN_3697	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GB:CAD21634.1.	0.583
MXAN_2427	MXAN_6627	MXAN_2427	MXAN_6627	Hypothetical protein; Identified by Glimmer2; putative.	Response regulator; Identified by match to protein family HMM PF00072.	0.627
MXAN_2983	MXAN_2984	MXAN_2983	MXAN_2984	Putative cysteine desulfurase; Identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.781
MXAN_2984	MXAN_0279	MXAN_2984	MXAN_0279	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Putative ribosome-binding factor A; Identified by similarity to SP:P09170; match to protein family HMM PF02033.	0.583
MXAN_2984	MXAN_2082	MXAN_2984	MXAN_2082	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	0.687
MXAN_2984	MXAN_2427	MXAN_2984	MXAN_2427	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Hypothetical protein; Identified by Glimmer2; putative.	0.566
MXAN_2984	MXAN_2983	MXAN_2984	MXAN_2983	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Putative cysteine desulfurase; Identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212.	0.781
MXAN_2984	MXAN_3025	MXAN_2984	MXAN_3025	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Conserved hypothetical protein.	0.668
MXAN_2984	MXAN_3199	MXAN_2984	MXAN_3199	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Conserved hypothetical protein; Identified by similarity to SP:Q58408; match to protein family HMM PF02457.	0.803
MXAN_2984	MXAN_3697	MXAN_2984	MXAN_3697	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Conserved hypothetical protein; Identified by similarity to GB:CAD21634.1.	0.606
MXAN_2984	MXAN_3770	MXAN_2984	MXAN_3770	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Conserved hypothetical protein.	0.574
MXAN_2984	MXAN_6627	MXAN_2984	MXAN_6627	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Response regulator; Identified by match to protein family HMM PF00072.	0.570
MXAN_2984	rbfA	MXAN_2984	MXAN_2070	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.	0.583
MXAN_3025	MXAN_2984	MXAN_3025	MXAN_2984	Conserved hypothetical protein.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.668
MXAN_3025	MXAN_3697	MXAN_3025	MXAN_3697	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by similarity to GB:CAD21634.1.	0.579
MXAN_3025	MXAN_6627	MXAN_3025	MXAN_6627	Conserved hypothetical protein.	Response regulator; Identified by match to protein family HMM PF00072.	0.690