cglB protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cglB

Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1. (416 aa)

Predicted Functional Partners:

tgl

0.621

MXAN_3063

0.561

MXAN_3061

0.551

MXAN_3062

0.551

aglT

0.512

mglA

0.491

tolB-2

0.485

MXAN_3059

0.434

aglZ

0.419

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_3059	cglB	MXAN_3059	MXAN_3060	Hypothetical protein; Identified by Glimmer2; putative.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.434
MXAN_3061	MXAN_3062	MXAN_3061	MXAN_3062	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	Hypothetical protein; Identified by Glimmer2; putative.	0.782
MXAN_3061	MXAN_3063	MXAN_3061	MXAN_3063	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.782
MXAN_3061	cglB	MXAN_3061	MXAN_3060	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.551
MXAN_3062	MXAN_3061	MXAN_3062	MXAN_3061	Hypothetical protein; Identified by Glimmer2; putative.	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	0.782
MXAN_3062	MXAN_3063	MXAN_3062	MXAN_3063	Hypothetical protein; Identified by Glimmer2; putative.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.795
MXAN_3062	cglB	MXAN_3062	MXAN_3060	Hypothetical protein; Identified by Glimmer2; putative.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.551
MXAN_3063	MXAN_3061	MXAN_3063	MXAN_3061	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	0.782
MXAN_3063	MXAN_3062	MXAN_3063	MXAN_3062	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Hypothetical protein; Identified by Glimmer2; putative.	0.795
MXAN_3063	cglB	MXAN_3063	MXAN_3060	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.561
aglT	aglZ	MXAN_4869	MXAN_2991	Adventurous gliding motility protein AglT; Identified by similarity to GB:AAO66317.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Adventurous gliding motility protein AglZ; Required for adventurous-gliding motility (A motility), in response to environmental signals sensed by the frz chemosensory system. Forms ordered clusters that span the cell length and that remain stationary relative to the surface across which the cells move, serving as anchor points (focal, transient adhesion sites) that allow the bacterium to move forward. Clusters disassemble at the lagging cell pole.	0.584
aglT	cglB	MXAN_4869	MXAN_3060	Adventurous gliding motility protein AglT; Identified by similarity to GB:AAO66317.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.512
aglT	tgl	MXAN_4869	MXAN_3084	Adventurous gliding motility protein AglT; Identified by similarity to GB:AAO66317.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Social gliding motility protein Tgl; Identified by similarity to GB:AAB62979.1.	0.815
aglZ	aglT	MXAN_2991	MXAN_4869	Adventurous gliding motility protein AglZ; Required for adventurous-gliding motility (A motility), in response to environmental signals sensed by the frz chemosensory system. Forms ordered clusters that span the cell length and that remain stationary relative to the surface across which the cells move, serving as anchor points (focal, transient adhesion sites) that allow the bacterium to move forward. Clusters disassemble at the lagging cell pole.	Adventurous gliding motility protein AglT; Identified by similarity to GB:AAO66317.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.584
aglZ	cglB	MXAN_2991	MXAN_3060	Adventurous gliding motility protein AglZ; Required for adventurous-gliding motility (A motility), in response to environmental signals sensed by the frz chemosensory system. Forms ordered clusters that span the cell length and that remain stationary relative to the surface across which the cells move, serving as anchor points (focal, transient adhesion sites) that allow the bacterium to move forward. Clusters disassemble at the lagging cell pole.	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	0.419
aglZ	mglA	MXAN_2991	MXAN_1925	Adventurous gliding motility protein AglZ; Required for adventurous-gliding motility (A motility), in response to environmental signals sensed by the frz chemosensory system. Forms ordered clusters that span the cell length and that remain stationary relative to the surface across which the cells move, serving as anchor points (focal, transient adhesion sites) that allow the bacterium to move forward. Clusters disassemble at the lagging cell pole.	Gliding motility protein MglA; Required for multicellular development and for both mechanisms of gliding: social (S) and adventurous (A) motility. Acts as an intracellular switch to coordinate A and S motilities. Controls the direction of gliding and gliding speed; Belongs to the small GTPase superfamily. Arf family. MglA subfamily.	0.889
cglB	MXAN_3059	MXAN_3060	MXAN_3059	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	Hypothetical protein; Identified by Glimmer2; putative.	0.434
cglB	MXAN_3061	MXAN_3060	MXAN_3061	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	alpha-L-glutamate ligases, RimK family; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.	0.551
cglB	MXAN_3062	MXAN_3060	MXAN_3062	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	Hypothetical protein; Identified by Glimmer2; putative.	0.551
cglB	MXAN_3063	MXAN_3060	MXAN_3063	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.561