MXAN_3133 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_3133

Putative membrane protein. (234 aa)

Predicted Functional Partners:

MXAN_3134

0.775

MXAN_3622

0.755

MXAN_0142

0.747

MXAN_2299

0.736

MXAN_4539

0.722

MXAN_1580

0.685

MXAN_5000

0.667

MXAN_5681

0.665

MXAN_0267

0.657

MXAN_5849

0.587

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0142	MXAN_0267	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	0.781
MXAN_0142	MXAN_1580	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Identified by match to protein family HMM PF03372.	0.599
MXAN_0142	MXAN_2299	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Putative lipoprotein.	0.774
MXAN_0142	MXAN_3133	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Putative membrane protein.	0.747
MXAN_0142	MXAN_3622	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Hypothetical protein; Identified by Glimmer2; putative.	0.690
MXAN_0142	MXAN_4539	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Hypothetical protein; Identified by Glimmer2; putative.	0.584
MXAN_0142	MXAN_5000	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	SPFH domain/band 7 family.	0.713
MXAN_0142	MXAN_5681	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	Putative SAM-dependent methyltransferase.	0.430
MXAN_0142	MXAN_5849	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	WGR domain protein; Identified by match to protein family HMM PF05406.	0.774
MXAN_0267	MXAN_0142	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	0.781
MXAN_0267	MXAN_2299	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	Putative lipoprotein.	0.775
MXAN_0267	MXAN_3133	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	Putative membrane protein.	0.657
MXAN_0267	MXAN_3622	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	Hypothetical protein; Identified by Glimmer2; putative.	0.456
MXAN_0267	MXAN_5000	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	SPFH domain/band 7 family.	0.415
MXAN_0267	MXAN_5849	Metallophosphoesterase; Identified by match to protein family HMM PF00149.	WGR domain protein; Identified by match to protein family HMM PF05406.	0.701
MXAN_1580	MXAN_0142	Identified by match to protein family HMM PF03372.	WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF02985; match to protein family HMM PF03130.	0.599
MXAN_1580	MXAN_2299	Identified by match to protein family HMM PF03372.	Putative lipoprotein.	0.673
MXAN_1580	MXAN_3133	Identified by match to protein family HMM PF03372.	Putative membrane protein.	0.685
MXAN_1580	MXAN_3622	Identified by match to protein family HMM PF03372.	Hypothetical protein; Identified by Glimmer2; putative.	0.622
MXAN_1580	MXAN_4539	Identified by match to protein family HMM PF03372.	Hypothetical protein; Identified by Glimmer2; putative.	0.542