MXAN_3188 protein (Myxococcus xanthus) - STRING interaction network

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query proteins and first shell of interactors

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

MXAN_3188

Identified by match to protein family HMM PF02562. (439 aa)

Predicted Functional Partners:

MXAN_3189

0.723

MXAN_3190

0.608

MXAN_5827

0.547

MXAN_4046

0.541

prkA

0.540

MXAN_5828

0.516

MXAN_5640

0.515

MXAN_1301

0.440

greB

0.440

MXAN_3187

0.432

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1301	MXAN_3188	MXAN_1301	MXAN_3188	CBS/transporter associated domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.	Identified by match to protein family HMM PF02562.	0.440
MXAN_3187	MXAN_3188	MXAN_3187	MXAN_3188	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF02562.	0.432
MXAN_3187	MXAN_3189	MXAN_3187	MXAN_3189	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	0.408
MXAN_3187	greB	MXAN_3187	MXAN_3186	Hypothetical protein; Identified by Glimmer2; putative.	Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.	0.773
MXAN_3188	MXAN_1301	MXAN_3188	MXAN_1301	Identified by match to protein family HMM PF02562.	CBS/transporter associated domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.	0.440
MXAN_3188	MXAN_3187	MXAN_3188	MXAN_3187	Identified by match to protein family HMM PF02562.	Hypothetical protein; Identified by Glimmer2; putative.	0.432
MXAN_3188	MXAN_3189	MXAN_3188	MXAN_3189	Identified by match to protein family HMM PF02562.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	0.723
MXAN_3188	MXAN_3190	MXAN_3188	MXAN_3190	Identified by match to protein family HMM PF02562.	Hypothetical protein; Identified by Glimmer2; putative.	0.608
MXAN_3188	MXAN_4046	MXAN_3188	MXAN_4046	Identified by match to protein family HMM PF02562.	Hypothetical protein; Identified by Glimmer2; putative.	0.541
MXAN_3188	MXAN_5640	MXAN_3188	MXAN_5640	Identified by match to protein family HMM PF02562.	Ribonuclease, Rne/Rng family; Identified by match to protein family HMM TIGR00757.	0.515
MXAN_3188	MXAN_5827	MXAN_3188	MXAN_5827	Identified by match to protein family HMM PF02562.	Conserved hypothetical protein; Identified by match to protein family HMM PF04285; Belongs to the UPF0229 family.	0.547
MXAN_3188	MXAN_5828	MXAN_3188	MXAN_5828	Identified by match to protein family HMM PF02562.	SpoVR-like protein; Identified by similarity to SP:P37875; match to protein family HMM PF04293.	0.516
MXAN_3188	greB	MXAN_3188	MXAN_3186	Identified by match to protein family HMM PF02562.	Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.	0.440
MXAN_3188	prkA	MXAN_3188	MXAN_5826	Identified by match to protein family HMM PF02562.	PrkA protein; Identified by similarity to PIR:JC4602.	0.540
MXAN_3189	MXAN_3187	MXAN_3189	MXAN_3187	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	Hypothetical protein; Identified by Glimmer2; putative.	0.408
MXAN_3189	MXAN_3188	MXAN_3189	MXAN_3188	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	Identified by match to protein family HMM PF02562.	0.723
MXAN_3189	MXAN_3190	MXAN_3189	MXAN_3190	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	Hypothetical protein; Identified by Glimmer2; putative.	0.727
MXAN_3189	greB	MXAN_3189	MXAN_3186	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.	0.408
MXAN_3190	MXAN_3188	MXAN_3190	MXAN_3188	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF02562.	0.608
MXAN_3190	MXAN_3189	MXAN_3190	MXAN_3189	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family.	0.727