STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3189Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0250 family. (101 aa)    
Predicted Functional Partners:
MXAN_3190
Hypothetical protein; Identified by Glimmer2; putative.
 
   0.727
MXAN_3188
Identified by match to protein family HMM PF02562.
       0.723
MXAN_1179
Conserved hypothetical protein.
  
     0.622
MXAN_6829
Putative late embryogenesis abundant-like protein.
  
     0.614
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the Nudix hydrolase family.
  
  
 0.590
MXAN_0521
Conserved hypothetical protein; Identified by similarity to GB:CAE07649.1.
  
     0.563
MXAN_6854
Conserved hypothetical protein; Identified by similarity to GB:AAP68290.1.
  
     0.553
MXAN_6050
Conserved domain protein; Identified by similarity to GB:AAQ65532.1.
  
 
   0.496
MXAN_5053
Response regulator/GGDEF/GAF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
  
     0.484
MXAN_4947
Conserved hypothetical protein.
  
     0.472
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.