MXAN_3200 protein (Myxococcus xanthus) - STRING interaction network

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Score

MXAN_3200

Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258. (120 aa)

Predicted Functional Partners:

rpoZ

0.803

rpoC

0.738

rpoB

0.625

greA

0.625

MXAN_6524

0.625

rpoD

0.601

rplS

0.582

rplM

0.573

rplU

0.567

MXAN_4728

0.567

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_3200	MXAN_4728	MXAN_3200	MXAN_4728	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	0.567
MXAN_3200	MXAN_6524	MXAN_3200	MXAN_6524	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	0.625
MXAN_3200	greA	MXAN_3200	MXAN_3405	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.625
MXAN_3200	rplM	MXAN_3200	MXAN_1993	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.573
MXAN_3200	rplS	MXAN_3200	MXAN_3549	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.582
MXAN_3200	rplU	MXAN_3200	MXAN_1469	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.567
MXAN_3200	rpoB	MXAN_3200	MXAN_3077	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.625
MXAN_3200	rpoC	MXAN_3200	MXAN_3078	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.738
MXAN_3200	rpoD	MXAN_3200	MXAN_5204	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.601
MXAN_3200	rpoZ	MXAN_3200	MXAN_4890	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.803
MXAN_4728	MXAN_3200	MXAN_4728	MXAN_3200	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	0.567
MXAN_4728	rpoB	MXAN_4728	MXAN_3077	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.687
MXAN_4728	rpoC	MXAN_4728	MXAN_3078	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.572
MXAN_4728	rpoD	MXAN_4728	MXAN_5204	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.447
MXAN_4728	rpoZ	MXAN_4728	MXAN_4890	Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.657
MXAN_6524	MXAN_3200	MXAN_6524	MXAN_3200	Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	0.625
greA	MXAN_3200	MXAN_3405	MXAN_3200	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Putative RNA polymerase-binding protein DksA; Identified by match to protein family HMM PF01258.	0.625
greA	rplS	MXAN_3405	MXAN_3549	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.458
greA	rpoB	MXAN_3405	MXAN_3077	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.839
greA	rpoC	MXAN_3405	MXAN_3078	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.896