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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3208ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (302 aa)    
Predicted Functional Partners:
MXAN_3209
Putative membrane protein.
  
 
 0.874
MXAN_1548
Putative membrane spanning protein.
 
 0.702
MXAN_4879
Putative ABC transporter, permease protein; Identified by similarity to PIR:AF2008.
 
 
 0.696
MXAN_7144
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.563
MXAN_3210
Penicillin-binding protein transpeptidase domain protein; Identified by match to protein family HMM PF00905.
       0.559
MXAN_2898
ATP-dependent metalloprotease, FtsH family; Identified by similarity to SP:P37476; match to protein family HMM PF00004; match to protein family HMM PF01434; Belongs to the AAA ATPase family.
 
 
 0.532
MXAN_6402
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
0.516
MXAN_7226
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
0.488
MXAN_1789
ABC transporter, ATP-binding protein/peptidase, C39 family; Identified by match to protein family HMM PF00005; match to protein family HMM PF03412.
 
   
 0.479
MXAN_6661
Putative branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to GB:AAR36781.1; match to protein family HMM PF00005.
 
     
0.462
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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