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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3209Putative membrane protein. (305 aa)    
Predicted Functional Partners:
MXAN_3208
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.874
MXAN_3210
Penicillin-binding protein transpeptidase domain protein; Identified by match to protein family HMM PF00905.
     
 0.568
MXAN_4875
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.513
MXAN_6867
Putative lipoprotein.
  
 
 0.513
MXAN_0554
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.453
MXAN_0721
Heme ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189.
  
 
 0.453
MXAN_1377
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.453
MXAN_1547
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.453
MXAN_1597
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.453
ccmA
Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
  
 
 0.453
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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