Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3259Identified by match to protein family HMM PF01522. (369 aa)    
Predicted Functional Partners:
MXAN_3262
Glycosyltransferase 1 family protein; Identified by similarity to SP:O06204.
 
   
 0.959
MXAN_3263
Putative glycosyltransferase; Identified by similarity to SP:O32267.
 
   
 0.925
MXAN_3260
Putative membrane protein.
     
 0.903
MXAN_3026
Identified by match to protein family HMM PF04932.
 
  
 0.880
MXAN_2688
Conserved hypothetical protein; Identified by similarity to GB:CAB58329.1; match to protein family HMM PF07940.
 
  
 0.865
MXAN_3231
Conserved hypothetical protein; Identified by similarity to GB:AAR35335.1.
 
  
 0.735
MXAN_3027
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
 
   
 0.720
MXAN_1482
Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.
  
     0.657
MXAN_3261
Transferase hexapeptide repeat family protein; Identified by match to protein family HMM PF00132.
       0.622
MXAN_3233
Conserved hypothetical protein; Identified by similarity to GB:AAM23573.1.
 
  
 0.523
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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