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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3348CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. (317 aa)    
Predicted Functional Partners:
MXAN_2445
Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.
 
  
 0.890
MXAN_5649
Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.
  
  
 0.866
MXAN_3349
DnaJ domain protein; Identified by match to protein family HMM PF00226.
     
 0.815
MXAN_2437
RNA polymerase sigma factor, FliA/WhiG/SigD family; Identified by similarity to SP:P31804; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
  
 0.716
MXAN_1210
Putative RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937.
  
  
 0.654
MXAN_2449
FliR/MopE/SpaR family protein; Identified by similarity to SP:P35537; match to protein family HMM PF01311.
  
  
 0.642
MXAN_2451
FlhB/HrpN/YscU/SpaS family protein.
 
 
 0.601
MXAN_2446
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.595
MXAN_6032
Putative response regulator/chemotaxis protein CheW; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
  
 
 0.586
MXAN_2450
Identified by similarity to SP:P35538; match to protein family HMM PF01312.
  
 
 0.583
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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