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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3463Fatty acid desaturase; Identified by match to protein family HMM PF00487. (361 aa)    
Predicted Functional Partners:
MXAN_3462
Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.
 
 
 0.928
MXAN_3461
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550.
 
 
 
 0.787
MXAN_7464
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.749
MXAN_7466
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.744
MXAN_6903
Identified by match to protein family HMM PF02274.
  
     0.738
MXAN_6235
Transposase, IS630 family, truncated.
  
     0.716
MXAN_6885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.697
MXAN_4918
Transposase, IS630 family; Identified by similarity to GB:AAP70294.1.
  
     0.694
MXAN_0510
Putative cell wall surface anchor family protein.
  
     0.689
lipB-2
Lipase chaperone; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.683
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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