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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3566Amidase; Identified by match to protein family HMM PF01425; match to protein family HMM TIGR01409. (548 aa)    
Predicted Functional Partners:
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 0.963
MXAN_2852
Identified by match to protein family HMM PF01425; Belongs to the amidase family.
  
  
 
0.927
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
  
  
 
0.927
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
 
 0.914
MXAN_0305
Hypothetical protein; Identified by Glimmer2; putative.
    
  0.905
acyP
Acylphosphatase; Identified by similarity to SP:P75877; match to protein family HMM PF00708.
    
  0.904
MXAN_0625
Aldehyde dehydrogenase; Identified by similarity to SP:P12693; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 0.903
MXAN_0626
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 0.903
MXAN_6986
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 0.903
MXAN_3430
Thioesterase domain protein; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
     
  0.900
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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