MXAN_3680 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_3680

Hypothetical protein; Identified by Glimmer2; putative. (173 aa)

Predicted Functional Partners:

MXAN_1568

0.905

ggt

0.904

gshB

0.902

MXAN_1567

0.901

pepA

0.901

MXAN_0644

0.900

MXAN_5440

0.900

MXAN_5806

0.900

MXAN_0969

0.811

MXAN_2035

0.811

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0644	MXAN_0969	MXAN_0644	MXAN_0969	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.803
MXAN_0644	MXAN_2035	MXAN_0644	MXAN_2035	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053.	0.803
MXAN_0644	MXAN_3680	MXAN_0644	MXAN_3680	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Hypothetical protein; Identified by Glimmer2; putative.	0.900
MXAN_0644	MXAN_5440	MXAN_0644	MXAN_5440	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Hypothetical protein; Identified by Glimmer2; putative.	0.956
MXAN_0644	MXAN_5806	MXAN_0644	MXAN_5806	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Putative glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.	0.900
MXAN_0644	ggt	MXAN_0644	MXAN_1383	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Gamma-glutamyltransferase; Identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066.	0.904
MXAN_0644	gshB	MXAN_0644	MXAN_0017	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Glutathione synthase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; Belongs to the prokaryotic GSH synthase family.	0.919
MXAN_0644	pepA	MXAN_0644	MXAN_4963	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	Cytosol aminopeptidase family protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.927
MXAN_0969	MXAN_0644	MXAN_0969	MXAN_0644	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433; match to protein family HMM PF03130.	0.803
MXAN_0969	MXAN_2035	MXAN_0969	MXAN_2035	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053.	0.907
MXAN_0969	MXAN_3680	MXAN_0969	MXAN_3680	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Hypothetical protein; Identified by Glimmer2; putative.	0.811
MXAN_0969	MXAN_5440	MXAN_0969	MXAN_5440	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Hypothetical protein; Identified by Glimmer2; putative.	0.803
MXAN_0969	MXAN_5806	MXAN_0969	MXAN_5806	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Putative glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.	0.800
MXAN_0969	pepA	MXAN_0969	MXAN_4963	Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cytosol aminopeptidase family protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.800
MXAN_1567	MXAN_1568	MXAN_1567	MXAN_1568	Urea amidolyase-like protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	LamB/YcsF family/allophanate hydrolase family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	0.999
MXAN_1567	MXAN_3680	MXAN_1567	MXAN_3680	Urea amidolyase-like protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Hypothetical protein; Identified by Glimmer2; putative.	0.901
MXAN_1567	MXAN_5806	MXAN_1567	MXAN_5806	Urea amidolyase-like protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Putative glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.	0.900
MXAN_1567	ggt	MXAN_1567	MXAN_1383	Urea amidolyase-like protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	Gamma-glutamyltransferase; Identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066.	0.900
MXAN_1568	MXAN_1567	MXAN_1568	MXAN_1567	LamB/YcsF family/allophanate hydrolase family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	Urea amidolyase-like protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.	0.999
MXAN_1568	MXAN_3680	MXAN_1568	MXAN_3680	LamB/YcsF family/allophanate hydrolase family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	Hypothetical protein; Identified by Glimmer2; putative.	0.905